PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002530.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 209aa    MW: 23042.3 Da    PI: 10.5982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002530.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-1895146256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr ++ +g+++AeIrdp +ng  +r +lg++ t+e+Aa a+++a+ +++g+
  Itr_sc002530.1_g00001.1  95 NYRGVRSRP-WGKFAAEIRDPAKNG--ARMWLGTYKTPEDAALAYDRAAFRMRGA 146
                              59****999.***********9987..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-3094154No hitNo description
PROSITE profilePS5103223.48595153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-3195154IPR001471AP2/ERF domain
SMARTSM003802.4E-3695159IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2295155IPR016177DNA-binding domain
PfamPF008475.9E-1295145IPR001471AP2/ERF domain
PRINTSPR003678.4E-1396107IPR001471AP2/ERF domain
PRINTSPR003678.4E-13135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVFGNAEVMS DFYLLETIRR YLLDDIDAPV LCRSGSSGRN PSPGLCESWG DSNFSGGSGW  60
LSSSAVPEMG SHKFPVILDF TAVPPPKVAQ AFKKNYRGVR SRPWGKFAAE IRDPAKNGAR  120
MWLGTYKTPE DAALAYDRAA FRMRGARALL NFPHRINSGE PEPVRIKSKK RSASTRDSSS  180
FALSKNMSCK RMKTGAQVVV QSSTSFHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-3794160470ATERF1
2gcc_A6e-3794160470ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358332.19e-54PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_011081402.11e-53PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803381e-47EF101_ARATH; Ethylene-responsive transcription factor 2
SwissprotO803372e-47EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLM0ZQG81e-53M0ZQG8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000058363e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-46ethylene responsive element binding factor 2